GgaEX1040300 @ galGal4
Exon Skipping
Gene
ENSGALG00000012538 | NR4A2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7981]
Coordinates
chr7:35533694-35534732:-
Coord C1 exon
chr7:35534603-35534732
Coord A exon
chr7:35534359-35534522
Coord C2 exon
chr7:35533694-35533896
Length
164 bp
Sequences
Splice sites
3' ss Seq
GAGCCGCGCTTCTCTTGCAGTGG
3' ss Score
7.55
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CGCACGGTGCAGAAGAACGCCAAATACGTGTGCCTGGCCAACAAGAACTGCCCGGTGGACAAACGCCGCCGGAACCGCTGCCAGTACTGCCGCTTCCAGAAGTGCCTGGCCGTCGGCATGGTGAAGGAGG
Seq A exon
TGGTTCGCACAGACAGCCTCAAAGGCCGGAGGGGTCGCTTGCCATCCAAACCGAAGAGCCCCCAGGAGCCCTCTCCCCCCTCTCCCCCGGTGAGTCTGATCAGTGCGCTGGTGAGAGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
Seq C2 exon
TTCCAGGCTAACCCCGACTACCAGATGAGCGGGGACGACACTCAGCACATCCAGCAGTTCTACGACCTGCTCACCGGCTCCATGGAGATCATCCGCGGCTGGGCAGAGAAGATCCCCGGCTTCACCGACCTGCCCAAAACCGACCAGGATCTGCTCTTCGAGTCCGCCTTCCTCGAGCTCTTCGTGCTGCGCCTGGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012538-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.473 C2=0.015
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(58.6=93.2)
A:
PF0010425=Hormone_recep=PU(0.5=1.8)
C2:
PF0010425=Hormone_recep=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGCCAACAAGAACTG
R:
CAGATCCTGGTCGGTTTTGGG
Band lengths:
253-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]