MmuEX6101380 @ mm10
Exon Skipping
Gene
ENSMUSG00000026826 | Nr4a2
Description
nuclear receptor subfamily 4, group A, member 2 [Source:MGI Symbol;Acc:MGI:1352456]
Coordinates
chr2:57109063-57110727:-
Coord C1 exon
chr2:57110627-57110727
Coord A exon
chr2:57110189-57110277
Coord C2 exon
chr2:57109063-57109265
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTTGAGTAATTCCTTTACAGTGG
3' ss Score
3.14
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
AATAAAAACTGCCCAGTGGACAAGCGCCGCCGAAATCGTTGTCAGTACTGTCGGTTTCAGAAGTGCCTAGCTGTTGGGATGGTTAAAGAAGGTAGGTCGAG
Seq A exon
TGGTTCGCACGGACAGTTTAAAAGGCCGGAGAGGTCGTTTACCCTCGAAGCCGAAGAGCCCACAGGATCCCTCTCCCCCCTCACCTCCG
Seq C2 exon
TTCCAGGCAAACCCTGACTATCAGATGAGTGGAGATGATACCCAACATATCCAGCAGTTCTACGATCTCCTGACCGGCTCTATGGAGATCATCAGAGGGTGGGCAGAGAAGATCCCTGGCTTTGCTGACCTGCCCAAAGCCGACCAGGACCTGCTTTTTGAATCAGCTTTCTTAGAATTATTTGTTCTGCGCTTAGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026826-'13-17,'13-16,14-17
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.473 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
PF0010425=Hormone_recep=PU(0.5=1.8)
C2:
PF0010425=Hormone_recep=FE(33.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCGGTTTCAGAAGTGCC
R:
GATCTTCTCTGCCCACCCTCT
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types