HsaEX6016077 @ hg38
Exon Skipping
Gene
ENSG00000153234 | NR4A2
Description
nuclear receptor subfamily 4 group A member 2 [Source:HGNC Symbol;Acc:HGNC:7981]
Coordinates
chr2:156326150-156330791:-
Coord C1 exon
chr2:156330668-156330791
Coord A exon
chr2:156327851-156328014
Coord C2 exon
chr2:156326150-156326207
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACAGGGCTCTTCCTTTGCAGTGG
3' ss Score
7.63
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GGAGGAGATTGGACAGGCTGGACTCCCCATTGCTTTTCTAAAAATCTTGGAAACTTTGTCCTTCATTGAATTACGACACTGTCCACCTTTAATTTCCTCGAAAACGCCTGTAACTCGGCTGAAG
Seq A exon
TGGTTCGCACAGACAGTTTAAAAGGCCGGAGAGGTCGTTTGCCCTCGAAACCGAAGAGCCCACAGGAGCCCTCTCCCCCTTCGCCCCCGGTGAGTCTGATCAGTGCCCTCGTCAGGGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
Seq C2 exon
AATATGAACATCGACATTTCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153234_MULTIEX1-4/8=C1-7
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.483 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0010425=Hormone_recep=PU(0.5=1.8)
C2:
PF0010425=Hormone_recep=PD(17.4=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
- HsaALTA0005820-1/3
- HsaALTA0005820-2/3
- HsaALTA0005820-3/3
- HsaALTA1036232-1/2
- HsaALTA1036232-2/2
- HsaALTA1036233-1/2
- HsaALTA1036233-2/2
- HsaALTD1027948-1/2
- HsaALTD1027948-2/2
- HsaEX0043721
- HsaEX0043722
- HsaEX0043725
- HsaEX1026120
- HsaEX1026121
- HsaINT0115654
- HsaINT0115655
- HsaINT0115656
- HsaINT0115657
- HsaINT0115658
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGATTGGACAGGCTGGA
R:
CTGTGACCATAGCCAGGGCAG
Band lengths:
181-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains