BtaEX6009723 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003650 | NR4A2
Description
Bos taurus nuclear receptor subfamily 4, group A, member 2 (NR4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001076208]
Coordinates
chr2:40013623-40015424:+
Coord C1 exon
chr2:40013623-40013752
Coord A exon
chr2:40014167-40014330
Coord C2 exon
chr2:40015222-40015424
Length
164 bp
Sequences
Splice sites
3' ss Seq
AACCGACTGTTCCTTTGCAGTGG
3' ss Score
8.15
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CGCACGGTGCAAAAAAACGCGAAATACGTGTGTTTAGCAAATAAAAACTGCCCAGTGGACAAGCGGCGCAGGAATCGCTGTCAGTACTGCCGGTTTCAGAAGTGCCTGGCTGTTGGGATGGTCAAAGAAG
Seq A exon
TGGTTCGCACCGACAGTTTAAAAGGCCGGAGAGGTCGTTTACCTTCCAAACCGAAGAGCCCGCAGGAGCCCTCTCCCCCTTCGCCCCCGGTGAGTCTGATCAGTGCCCTCGTCAGGGCCCATGTCGACTCCAACCCGGCTATGACCAGCCTGGACTATTCCAGG
Seq C2 exon
TTCCAGGCGAACCCTGACTATCAGATGAGTGGAGATGACACCCAGCATATCCAGCAATTCTATGATCTCCTGACTGGCTCCATGGAGATCATCAGGGGCTGGGCAGAGAAGATCCCGGGCTTCACTGACCTGCCCAAAGCCGACCAAGACCTGCTTTTCGAATCGGCTTTCTTAGAACTATTTGTGCTGCGATTAGCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003650-'9-6,'9-5,11-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.473 C2=0.015
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(58.6=93.2)
A:
PF0010425=Hormone_recep=PU(0.5=1.8)
C2:
PF0010425=Hormone_recep=FE(33.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCCGGTTTCAGAAGTGC
R:
CTGTAGGCTAATCGCAGCACA
Band lengths:
249-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]