DreEX6021004 @ danRer10
Exon Skipping
Gene
ENSDARG00000044532 | nr4a2b
Description
nuclear receptor subfamily 4, group A, member 2b [Source:ZFIN;Acc:ZDB-GENE-040718-103]
Coordinates
chr6:12229508-12230242:+
Coord C1 exon
chr6:12229508-12229637
Coord A exon
chr6:12229738-12229901
Coord C2 exon
chr6:12230040-12230242
Length
164 bp
Sequences
Splice sites
3' ss Seq
ATATTTATTATTTTTTACAGTTG
3' ss Score
7.53
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
CGCACGGTGCAGAAAAACGCCAAATACGTTTGTCTGGCGAACAAAAACTGTCCTGTGGACAAAAGACGGCGAAATCGATGCCAATATTGCCGTTTTCAAAAGTGCCTGGTCGTTGGGATGGTAAAGGAAG
Seq A exon
TTGTCAGAACCGCCAGCTTAAAAGGTCGAAGAGGTCGCCTCCCCTCCAAACCTAAAAGTCCGCAGGATATCCCTGTCTCTTTCACACCCGTCAATCTCCTGAACGCACTAGTGAGAGCGCACATAGACTCCAACCCCTCCATGGCCCGTCTGGACTACTCTAAA
Seq C2 exon
TTTCAGACGAGTCCGGAGTATCACAGTGGAGGAGATGAATCTCTGCACATTCAGCAGTTCTACGATCTACTCACTGCCTCAATGAGCATCATTCGCGGATGGGCCGAAAAAATCCCCGGCTTTACCGAGCTGCCCAAATGCGACCAGGAGCTCCTTTTCGAGTCTGCCTTCCTTGAACTCTTCGTGTTGCGGCTGGCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044532-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.226 C2=0.000
Domain overlap (PFAM):
C1:
PF0010513=zf-C4=PD(58.6=93.2)
A:
NO
C2:
PF0010425=Hormone_recep=PU(35.1=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACAAAAGACGGCGAAA
R:
GCAGACTCGAAAAGGAGCTCC
Band lengths:
244-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]