RnoEX0062089 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8467240-8470149:+
Coord C1 exon
chr3:8467240-8467371
Coord A exon
chr3:8468523-8468525
Coord C2 exon
chr3:8470081-8470149
Length
3 bp
Sequences
Splice sites
3' ss Seq
GTGCACTTTATGGACTCAAGAGG
3' ss Score
-2.53
5' ss Seq
AGGGTAATT
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAGAAACAGATGACTTGCACCGACATCAACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAG
Seq A exon
AGG
Seq C2 exon
CTGTGCCTGAAAGTTCCTGAATGTGCGAGGCAGCACAGGCCTGGGAGGGAGAGGCAGGAGGATTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.000 C2=0.478
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(51.6=72.7)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000020073fB10050
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGTTGAGGGAGCAGCAC
R:
TGACAATCCTCCTGCCTCTCC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]