RnoEX0062092 @ rn6
Exon Skipping
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8467240-8474498:+
Coord C1 exon
chr3:8467240-8467371
Coord A exon
chr3:8470081-8470149
Coord C2 exon
chr3:8474427-8474498
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATTCATGTCTGTCATCCAGCTG
3' ss Score
6.68
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAGAAACAGATGACTTGCACCGACATCAACACCTTAACGAGGCAGAAGGAACTTCTCCTGCAGAAGCTGAGCACCTTTGAAGAGACCAACCGCACCCTCCGAGATCTGTTGAGGGAGCAGCACTGCAAAGAG
Seq A exon
CTGTGCCTGAAAGTTCCTGAATGTGCGAGGCAGCACAGGCCTGGGAGGGAGAGGCAGGAGGATTGTCAG
Seq C2 exon
GATTCCGAGAGACTAATGGAGCAACAAGGTGCATTACTGAAACGTCTGGCAGAGGCCGACTCAGAGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.478 C2=0.224
Domain overlap (PFAM):
C1:
PF123293=TMF_DNA_bd=PD(51.6=72.7)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCACCGACATCAACACCT
R:
TGCCAGACGTTTCAGTAATGCA
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]