RnoEX0062348 @ rn6
Exon Skipping
Gene
ENSRNOG00000001427 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:RGD Symbol;Acc:1310213]
Coordinates
chr12:23553664-23564569:+
Coord C1 exon
chr12:23553664-23553901
Coord A exon
chr12:23560056-23560191
Coord C2 exon
chr12:23560970-23564569
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTGACAGGCA
3' ss Score
10.2
5' ss Seq
TAGGTCTCC
5' ss Score
-3.36
Exon sequences
Seq C1 exon
CCTGGTCCCCACCATGAGTGCCGAGCTCAATGTGCCCATGGACCCCTCTGCCCCCGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGACGCAGCTACCTGGAACTGGTCACATCCAACCACCACTCGGTGCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCCGGACCTCTGCCCTCCTGTCCGGCTTCGCCATG
Seq A exon
GCACTTTCGTACACCAGCCTCTTCTGTCAGTGTCCCCCAGTGGATGTGCTGAGCAATTTCCCAGTCCAGCAGCAAGCGCTGGTGCCCAACCTTCAGCTCGTCATGTTCCTCCTCCTGATCTACAGTCCACTCATAG
Seq C2 exon
GTGGCCATGGTGGAGGTGCAGCTGGAGACCAAGTACCAGTACCCTCAGCCCCTGCTCATCGCCTTCAGCGCCTGCACCACGGTGCTGGTAGCCGTGCACCTATTTGCCCTGCTCATCAGCACATGCATCCTGCCCAACGTGGAAGCCGTGAGCAACATCCACAACCTCAACTCCATCAGCGAGTCGCCGCACGAGCGCATGCACCCGTACATCGAGCTTGCCTGGGGCTTCTCTACCGTTCTGGGCATCCTGCTTTTCCTGGCTGAGGTGGTCCTGCTCTGCTGGATCAAGTTCCTCCCAGTGGATGCCAAGGATCAGCCAGGCTCGCATAGCCACACGGGCTGGCAGGCCGCTCTGGTGTCCACCATCATCATGGTACCTGTGGGTCTCATCTTCGTGGTCTTTACTATCCACTTCTACCGCTCCCTGGTGCGACATAAGACAGAGCGCCACAACCGTGAGATCGAGGAACTGCACAAGCTCAAGGTGCAGCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001427-'3-4,'3-3,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.000 C2=0.190
Domain overlap (PFAM):
C1:
PF078567=Orai-1=PU(18.2=42.5)
A:
PF078567=Orai-1=PD(21.7=21.7)
C2:
PF078567=Orai-1=PD(80.7=85.8)
Main Inclusion Isoform:
ENSRNOT00000001938fB10097
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCACATCCAACCACCACTC
R:
AGGATGCATGTGCTGATGAGC
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]