RnoEX0062347 @ rn6
Exon Skipping
Gene
ENSRNOG00000001427 | Orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:RGD Symbol;Acc:1310213]
Coordinates
chr12:23544287-23564569:+
Coord C1 exon
chr12:23544287-23544658
Coord A exon
chr12:23553664-23553901
Coord C2 exon
chr12:23560970-23564569
Length
238 bp
Sequences
Splice sites
3' ss Seq
CACGTTCCTTCTTCCTCCAGCCT
3' ss Score
9.55
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACGCGGCCAAGAACAGATGCTGGGCATCCCCTAGTGTCACTGGCTAGAAGCAGGGCTCTCCCACGCTCGGACCCACCCACCTGAGCCCCACAGGGGCTGATAGCACTTTGCTGAAGTGAAGACCCCCTAGATCTTGTAGGAGGGGTCGATCCCCACCCAGCTCTTCAGGTCACATGGTCTGCGGCGGGCCCCACGGATGGGTCACGTGACGGCGGCGCAGCGTTGCCTAGGCAGCGGCTGCGGGCGGAAAGAGGGAGGGGGCCGGTCCTCCGCCCTGGCCCGGCTGCCGGGCCACCCGGCCCCGACACAGACGCTAGCCACGAGCCGGAGCGGAGAACTGGAGCCAAGCGCGCTGAGGGCTAGCCAGCCAGG
Seq A exon
CCTGGTCCCCACCATGAGTGCCGAGCTCAATGTGCCCATGGACCCCTCTGCCCCCGCCTGCCCTGAACCCGGCCACAAGGGCATGGATTACCGAGACTGGGTCCGACGCAGCTACCTGGAACTGGTCACATCCAACCACCACTCGGTGCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCAGGGCCAAGCTGAAGGCCTCCAGCCGGACCTCTGCCCTCCTGTCCGGCTTCGCCATG
Seq C2 exon
GTGGCCATGGTGGAGGTGCAGCTGGAGACCAAGTACCAGTACCCTCAGCCCCTGCTCATCGCCTTCAGCGCCTGCACCACGGTGCTGGTAGCCGTGCACCTATTTGCCCTGCTCATCAGCACATGCATCCTGCCCAACGTGGAAGCCGTGAGCAACATCCACAACCTCAACTCCATCAGCGAGTCGCCGCACGAGCGCATGCACCCGTACATCGAGCTTGCCTGGGGCTTCTCTACCGTTCTGGGCATCCTGCTTTTCCTGGCTGAGGTGGTCCTGCTCTGCTGGATCAAGTTCCTCCCAGTGGATGCCAAGGATCAGCCAGGCTCGCATAGCCACACGGGCTGGCAGGCCGCTCTGGTGTCCACCATCATCATGGTACCTGTGGGTCTCATCTTCGTGGTCTTTACTATCCACTTCTACCGCTCCCTGGTGCGACATAAGACAGAGCGCCACAACCGTGAGATCGAGGAACTGCACAAGCTCAAGGTGCAGCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001427-'1-4,'1-1,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=0.244 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
PF078567=Orai-1=PU(18.2=42.5)
C2:
PF078567=Orai-1=PD(80.7=85.8)
Main Skipping Isoform:
ENSRNOT00000001938fB10096
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGAAGTGAAGACCCCCT
R:
GTACTTGGTCTCCAGCTGCAC
Band lengths:
301-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]