DreEX0052654 @ danRer10
Exon Skipping
Gene
ENSDARG00000035148 | orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:ZFIN;Acc:ZDB-GENE-060531-127]
Coordinates
chr5:60871325-60886924:+
Coord C1 exon
chr5:60871325-60871519
Coord A exon
chr5:60881896-60882131
Coord C2 exon
chr5:60886154-60886924
Length
236 bp
Sequences
Splice sites
3' ss Seq
TTCAAAACTCTCCTTCACAGCTA
3' ss Score
7.1
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGCGGATTCTGAATCACAAACGGACTATTCAACTCATGAATCTTATTCGTTCAACCAAAGATTCGACTCTTTGAGGATTTGGACATCGCCAGAGCGGAAAAGCGAGTCCAGAACTGGAGCTGTCATTTCTTTCGCAGATACACTTTCTGTCGGCCCTCATGTGGATGTGAAAACAAAACGAGACAGACAGCAAAG
Seq A exon
CTACTATGAGCAGTGAGCTCACAGTGCCAATGGGCTCTCCAGCTCCCGGCGGCTCAGACCGGCTGCAGGATGGCGGTGGGATGGACTACAGGGACTGGGTTCGGCGCAGTTATCTGGAGCTGGTGACCTCCAACCATCACTCGGTCCAGGCTCTGTCATGGAGAAAACTGTACCTCAGCAGGGCCAAACTCAAAGCCTCCAGTCGAACCTCAGCCCTGCTGTCTGGCTTTGCCATG
Seq C2 exon
GTAGCCATGGTGGAGGTTCAGCTGGAGATGCAGTACAACTACCCTCGAGTCTTGCTCATCGCCTTCAGCGTATGCACCACAGTGCTGGTGGCCGTCCACCTATTCGCCCTCCTCATCAGCACCTGCATCCTGCCCAACGTAGAAGCCGTCAGCAACATCCACAACCTCAACTCCGTCTCCGAGTCTCCTCACGAGAGGATGCACCACTACATCGAGCTAGCCTGGGGTTTTTCCACCGCTCTGGGCATCCTCCTGTTTCTGGCCGAGGTGGTGCTGCTCTGCTGGATCAAGTTCCTGCCGGTTGACTCCGGGGCTCAGTCGGCCTCAGCCCTGGTGGCTCTTAAGCAGAACTGCAGCACTCCTGCTGTCCAGCCCGGCCACAGCGGCTGGCAGGCGGCTTTAGCCTCCACTATCATCATGGTGCCGGTGGGATTGATCTTTGTGGTGTTCACCATTCACTTCTACCGTTCACTAGTGCGGCACAAAACAGAGCGCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035148-'0-4,'0-2,2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.224 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF078567=Orai-1=PU(16.8=43.0)
C2:
PF078567=Orai-1=PD(82.2=86.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACTTTCTGTCGGCCCTCA
R:
GGTGGAAAAACCCCAGGCTAG
Band lengths:
294-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]