GgaEX1041305 @ galGal4
Exon Skipping
Gene
ENSGALG00000001837 | ORAI2
Description
Protein orai-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZLW2]
Coordinates
chr19:4139817-4148388:+
Coord C1 exon
chr19:4139817-4139860
Coord A exon
chr19:4141083-4141323
Coord C2 exon
chr19:4145752-4148388
Length
241 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTTTTATTTCCTCAGTGC
3' ss Score
8.41
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CCCCCGGAGCCCCCTGCAGCCCCTCCATGCCCACGGGCAGTCAG
Seq A exon
TGCTTCCCTCATGATGAGTTCTGAACTGAACGTCCCGGTGGATCCCTCCACTCCTGCTTGCTGCTCTGAGCCTGGCACCAAGGGCATGGATTATCGGGACTGGGTGCGCCGCAGCTACCTGGAGTTGGTGACCTCCAACCACCACTCTGTTCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCCGAGCCAAGCTGAAAGCCTCCAGCAGAACCTCTGCTCTGCTCTCTGGATTTGCAATG
Seq C2 exon
GTTGCCATGGTGGAGGTGCAGCTGGAGATGCAGTACAAGTACCCGCAGATGCTGCTCATCGCGTTCAGTGCCTGCACAACGGTGCTCGTGGCCGTCCATCTCTTTGCCCTTCTCATCAGCACCTGCATTCTGCCTAACGTGGAAGCAGTGAGCAACATCCACAACCTGAATTCCATCAGCGAATCCCCGCACGAGCGCATGCATCCCTACATCGAGCTGGCGTGGGGCTTCTCCACGGTGCTGGGAATCCTCCTTTTCCTCGCAGAAGTGGTGCTGCTGTGCTGGATCAAATTCCTGCCCGTGGACTCCATCCTGAAGAACGACACCACCACCATCCAGAAGCCCAGCGGCCACGCGGGCTGGCAGGCAGCTCTGGTCTCCACCATCATCATGGTCCCAGTGGGGCTGATCTTTGTCGTCTTCACCATTCACTTCTACCGCTCTTTGGTGCGGCACAAAACGGAGCGCCACAACCGAGAGATCGAAGAGCTTCACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001837-'5-7,'5-3,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF078567=Orai-1=PU(17.6=44.7)
C2:
PF078567=Orai-1=PD(81.3=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGCCCCTCCATG
R:
GCGAGGAAAAGGAGGATTCCC
Band lengths:
296-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]