GgaEX1041305 @ galGal3
Exon Skipping
Gene
ENSGALG00000001837 | ORAI2_CHICK
Description
NA
Coordinates
chr19:4104421-4112992:+
Coord C1 exon
chr19:4104421-4104464
Coord A exon
chr19:4105687-4105927
Coord C2 exon
chr19:4110356-4112992
Length
241 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTTTTATTTCCTCAGTGC
3' ss Score
8.41
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CCCCCGGAGCCCCCTGCAGCCCCTCCATGCCCACGGGCAGTCAG
Seq A exon
TGCTTCCCTCATGATGAGTTCTGAACTGAACGTCCCGGTGGATCCCTCCACTCCTGCTTGCTGCTCTGAGCCTGGCACCAAGGGCATGGATTATCGGGACTGGGTGCGCCGCAGCTACCTGGAGTTGGTGACCTCCAACCACCACTCTGTTCAGGCCCTGTCCTGGAGGAAGCTGTACCTGAGCCGAGCCAAGCTGAAAGCCTCCAGCAGAACCTCTGCTCTGCTCTCTGGATTTGCAATG
Seq C2 exon
GTTGCCATGGTGGAGGTGCAGCTGGAGATGCAGTACAAGTACCCGCAGATGCTGCTCATCGCGTTCAGTGCCTGCACAACGGTGCTCGTGGCCGTCCATCTCTTTGCCCTTCTCATCAGCACCTGCATTCTGCCTAACGTGGAAGCAGTGAGCAACATCCACAACCTGAATTCCATCAGCGAATCCCCGCACGAGCGCATGCATCCCTACATCGAGCTGGCGTGGGGCTTCTCCACGGTGCTGGGAATCCTCCTTTTCCTCGCAGAAGTGGTGCTGCTGTGCTGGATCAAATTCCTGCCCGTGGACTCCATCCTGAAGAACGACACCACCACCATCCAGAAGCCCAGCGGCCACGCGGGCTGGCAGGCAGCTCTGGTCTCCACCATCATCATGGTCCCAGTGGGGCTGATCTTTGTCGTCTTCACCATTCACTTCTACCGCTCTTTGGTGCGGCACAAAACGGAGCGCCACAACCGAGAGATCGAAGAGCTTCACAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001837-'4-5,'4-1,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF078567=Orai-1=PU(17.6=44.7)
C2:
PF078567=Orai-1=PD(81.3=86.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGCCCCTCCATG
R:
GCGAGGAAAAGGAGGATTCCC
Band lengths:
296-537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]