RnoEX0062438 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83955096-83956919:-
Coord C1 exon
chr14:83956802-83956919
Coord A exon
chr14:83956434-83956532
Coord C2 exon
chr14:83955096-83955150
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTCCTTTTGCTCCGTCCAGCGT
3' ss Score
6.14
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GAAGCTTCTTGACTTCCAAAGGGGAGAACAGTGAAGAAGATGAAGATACTGAGTACTTTGATGCCATGGAAGACTCCACATCTTTCATCACCGTAATCACCGAGGCCAAGGAAGACAG
Seq A exon
CGTGATCATTTGGTAACAGACGAGACGCCCACTCCCGTTTCCTGTCGTGAAGCCTGTTTCATACACGCTTGCCCACTTGGGCTGTTTCTAGGATCACAG
Seq C2 exon
AAAGCCTGAGGGTGGACCTGGGACGACCTCTGTGGACTGGACCTCAGCAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=0.000 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000065501fB10110
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTCTTGACTTCCAAAGGGG
R:
ATCTGCTGAGGTCCAGTCCAC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]