RnoEX6043063 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83955096-83957722:-
Coord C1 exon
chr14:83957530-83957722
Coord A exon
chr14:83956802-83956919
Coord C2 exon
chr14:83955096-83955150
Length
118 bp
Sequences
Splice sites
3' ss Seq
GAGTCTCTCTGTGTGTCCAGGAA
3' ss Score
7.24
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCCTGTAAGGACTTCCTGGAACTAGCGGAGATTCACAGCCGGAAATGGCAGCGGGCTCTGAATTATGAGCAGGAGCAACGAGTCCACCTGGAGGAAACCATTGAGCAGTTGGCCAAGCAGCACAACAGTCTTGAACGGGCCTTCTGCAACACCCCTGGCGGGCCAGCCAGCTCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GAAGCTTCTTGACTTCCAAAGGGGAGAACAGTGAAGAAGATGAAGATACTGAGTACTTTGATGCCATGGAAGACTCCACATCTTTCATCACCGTAATCACCGAGGCCAAGGAAGACAG
Seq C2 exon
AAAGCCTGAGGGTGGACCTGGGACGACCTCTGTGGACTGGACCTCAGCAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645-'30-21,'30-12,36-21=AN
Average complexity
A_C1
Mappability confidence:
100%=89=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=0.650 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000065501fB10112
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGAACTAGCGGA
R:
ATCTGCTGAGGTCCAGTCCAC
Band lengths:
237-355
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001271; ELM sequence: EDEDTEYFDAME; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]