RnoEX0062441 @ rn6
Exon Skipping
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83956802-83957722:-
Coord C1 exon
chr14:83957530-83957722
Coord A exon
chr14:83957311-83957434
Coord C2 exon
chr14:83956802-83956919
Length
124 bp
Sequences
Splice sites
3' ss Seq
TCTACTTCCTTTCCTCTCAGGTC
3' ss Score
11.46
5' ss Seq
GAAGTTCAG
5' ss Score
-12.32
Exon sequences
Seq C1 exon
GCCTGTAAGGACTTCCTGGAACTAGCGGAGATTCACAGCCGGAAATGGCAGCGGGCTCTGAATTATGAGCAGGAGCAACGAGTCCACCTGGAGGAAACCATTGAGCAGTTGGCCAAGCAGCACAACAGTCTTGAACGGGCCTTCTGCAACACCCCTGGCGGGCCAGCCAGCTCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GTCCTAAAACCATGCGGGCTTGTGCCGAGGAGTACAGACTCCCTCTGTGGTGCGGCACGTCCCTTGCCTGTCACTAACTGCCAACATCCCCACCCACCATGTCGAAGTTCTAAGTCCCAATGAA
Seq C2 exon
GAAGCTTCTTGACTTCCAAAGGGGAGAACAGTGAAGAAGATGAAGATACTGAGTACTTTGATGCCATGGAAGACTCCACATCTTTCATCACCGTAATCACCGAGGCCAAGGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645_MULTIEX2-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=0.040 C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000065501fB10112
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGCTCTGAATTATGAGCA
R:
GCCTCGGTGATTACGGTGATG
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]