GgaEX1041370 @ galGal4
Exon Skipping
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10708781-10710407:-
Coord C1 exon
chr15:10710221-10710407
Coord A exon
chr15:10709023-10709140
Coord C2 exon
chr15:10708781-10708847
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAACCCCTTTGTGCCCCCAGGGA
3' ss Score
9.86
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTTGCCGTGATTTCCTGGACTTAGCAGAAACTCACAGCCGAAAATGGCAGCGGGCGCTGCAGTATGAGCGGGAGCAGCGGATCCGGCTGGAGGAGACCATCGAGCAGCTAGCCAAGCAGCACAACAGCTTGGAGAGAGCCTGCCGCGGGGCACCGGGCAGCGCAGGCAGCGCCGGCACCACCAAGG
Seq A exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
Seq C2 exon
GCGTTCGGGCAGTAACCTGAGTGGGGCCAGCGAGGGCCACCCTGAGGACTGGAACCTGGAGGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'22-9,'22-7,23-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.800 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCGTGATTTCCTGGACT
R:
GTCCTCCAGGTTCCAGTCCTC
Band lengths:
250-368
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001271; ELM sequence: EDEDTEYFDAME; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]