GgaEX1041370 @ galGal3
Exon Skipping
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11044283-11046776:-
Coord C1 exon
chr15:11046590-11046776
Coord A exon
chr15:11044539-11044656
Coord C2 exon
chr15:11044283-11044363
Length
118 bp
Sequences
Splice sites
3' ss Seq
CAACCCCTTTGTGCCCCCAGGGA
3' ss Score
9.86
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTTGCCGTGATTTCCTGGACTTAGCAGAAACTCACAGCCGAAAATGGCAGCGGGCGCTGCAGTATGAGCGGGAGCAGCGGATCCGGCTGGAGGAGACCATCGAGCAGCTAGCCAAGCAGCACAACAGCTTGGAGAGAGCCTGCCGCGGGGCACCGGGCAGCGCAGGCAGCGCCGGCACCACCAAGG
Seq A exon
GGAGCGTGCAGTCTGCCAAAGGAGAGGCCAGTGATGAAGATGAAGAGACGGAGTATTTTGATGCCATGGAGGATGCACCAGCTTTTATCACTGTAACCGCAGACCCCAAGCACCACAG
Seq C2 exon
GCGTTCGGGCAGTAACCTGAGTGGGGCCAGCGAGGGCCACCCTGAGGACTGGAACCTGGAGGACAGCGTGAGTTGGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758-'7-6,'7-4,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.775 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCGTGATTTCCTGGACT
R:
GTCCTCCAGGTTCCAGTCCTC
Band lengths:
250-368
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001271; ELM sequence: EDEDTEYFDAME; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]