MmuEX6083577 @ mm9
Exon Skipping
Gene
ENSMUSG00000020435 | Osbp2
Description
oxysterol binding protein 2 [Source:MGI Symbol;Acc:MGI:1921559]
Coordinates
chr11:3615500-3617989:-
Coord C1 exon
chr11:3617797-3617989
Coord A exon
chr11:3617100-3617217
Coord C2 exon
chr11:3615500-3615554
Length
118 bp
Sequences
Splice sites
3' ss Seq
GAGTCTCGCTCTGTGTTCAGGAA
3' ss Score
7.84
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCCTGTAGGGACTTCCTGGAACTAGCTGAGACTCACAGCCGGAAATGGCAGCGGGCTCTAAATTATGAGCAGGAGCAGCGTGTCCACCTGGAAGAGACAATTGAGCAGTTGGCCAAGCAGCACAACAGTCTTGAACGGGCCTTCTGCAACACCCCTGGCGGGCCAGCCAGCTCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GAAGCTTCTTGACTTCCAAAGGAGAGAACAGTGAGGAAGATGAAGATACTGAGTACTTTGACGCCATGGAAGACTCTACATCTTTCATCACCGTAGTCACTGAGGCCAAGGAAGACAG
Seq C2 exon
AAAGCCTGAGAGTGGACCTGGGACCACCACTGTGGACTGGACCTCAGCAGATAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020435-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=0.735 C2=0.789
Domain overlap (PFAM):
C1:
PF045528=Sigma54_DBD=PD(35.5=95.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTTCCTGGAACTAGCT
R:
ATTATCTGCTGAGGTCCAGTCCA
Band lengths:
242-360
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001271; ELM sequence: EDEDTEYFDAME; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: