BtaEX6073844 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71880656-71882322:+
Coord C1 exon
chr17:71880656-71880848
Coord A exon
chr17:71881278-71881395
Coord C2 exon
chr17:71882274-71882322
Length
118 bp
Sequences
Splice sites
3' ss Seq
GCAGCGCGGTGTGTCTCTAGGAA
3' ss Score
6.65
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
GCTTGCAGGGACTTCCTGGAACTAGCGGAGACGCACAGCCGGAAATGGCAGCGAGCCCTGCAGTATGAGCAGGAGCAGCGCGTCCACCTAGAGGAGACCATCGAGCAACTGGCCAAGCAGCACAACAGCCTCGAGCGCGCCTTCCGCAGCGCCCCGGGCCGGGCCGCCAACCCCAGCAAGAGCTTCAGCGAGG
Seq A exon
GAAGCCTCTTCACCAGCAAAGCCGAGGACAGTGAGGACGATGAGGACACAGAGTACTTCGACGCCATGGAAGACGCCGCGTCCTTCATCACCGTGACCACTGAGCCCAGCGAGGACGG
Seq C2 exon
AAAAGCTGAGGCAGGGACTGCAGGCTCCGTGGAATGGACCGCAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146-'20-9,'20-7,21-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=0.775 C2=0.882
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGAACTAGCGGA
R:
ATTGTCTGCGGTCCATTCCAC
Band lengths:
234-352
Functional annotations
There are 1 annotated functions for this event
PMID: 15212954
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: glutathione s tranferase tag, pull down. ELM ID: ELMI001271; ELM sequence: EDEDTEYFDAME; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]