RnoEX0062526 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63257257-63353321:+
Coord C1 exon
chr3:63257257-63257789
Coord A exon
chr3:63289137-63289305
Coord C2 exon
chr3:63353172-63353321
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGTCGGTTTTGGGTTTTTAGGAT
3' ss Score
9.75
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACCATTCCATGGCCGGAGCGCTGCAGTCATTCTCGGCCTCTTCTTTCCAGCCCAGCGCTCCCGCCGCGGCTGGACTGGACACGCGGGGGGCCTATCTCTCTCGGGCAGGGTCTGGCGGGTGACTGATCTCGGTACCCCACGGATTCCCGCGGACGCCCGGCAGGGACGAGACCGGCGCTGGAGCCCGCACGAAGCGGGCGCGGTGGGAGCAGAGCAGGACACCATGGAGCCCGCGGGAACGATCTGGACTGGCGGGTGTTCCGGAGCCGGGGGCGGGGAGCCCGGAGCGCCGCCCCGCCAGCGCGCCCCGCCCGTGGGAGAGGAGGGGCTGCGGCGCGGAGGACCACTGGAGGCGCCGCGCGGCCGCCGCTGTCCGCGCTGGAGACCACAGCACCGCACAGGCAGCGCCTGTCCTCCGCGCCTCCGGAGCCTCCTCCAGCCTGCGCGCCGGGCGGATCGCACGGGCCATCTCCCACGGCGACCTACGGCTCGCCCTGCAG
Seq A exon
GATGTTGGCGACAGGATACATGGGAAATTGAAGCCACTGGATATGCCTGGGGTGTGACTGAGCATCAGAAGCATCTGAGAGAAGTTGCTCTCAGGGGAGCACTAGACGGTGGAGTCCATTGAGCCAGAGTCTGCCTTGGAACCGGCTTTATCAGCGGCTCAGCCCAGAG
Seq C2 exon
GTTCTTACTGGGAAGCCAATAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAGCGGGGCTGACAGACTGCAGCAAAAGAACAGAGGCCAGGCCACTGAGAAGCAGTTGTAATGGTACAGCCAAGCTAGAAGACTCTGACACGAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACCACTGGAGGCG
R:
CCTGGCCTCTGTTCTTTTGCT
Band lengths:
254-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]