RnoEX0062527 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63257257-63379292:+
Coord C1 exon
chr3:63257257-63257789
Coord A exon
chr3:63353172-63353321
Coord C2 exon
chr3:63379037-63379292
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTGTCCTTGTTCTTTTCCAGGTT
3' ss Score
12.07
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
ACCATTCCATGGCCGGAGCGCTGCAGTCATTCTCGGCCTCTTCTTTCCAGCCCAGCGCTCCCGCCGCGGCTGGACTGGACACGCGGGGGGCCTATCTCTCTCGGGCAGGGTCTGGCGGGTGACTGATCTCGGTACCCCACGGATTCCCGCGGACGCCCGGCAGGGACGAGACCGGCGCTGGAGCCCGCACGAAGCGGGCGCGGTGGGAGCAGAGCAGGACACCATGGAGCCCGCGGGAACGATCTGGACTGGCGGGTGTTCCGGAGCCGGGGGCGGGGAGCCCGGAGCGCCGCCCCGCCAGCGCGCCCCGCCCGTGGGAGAGGAGGGGCTGCGGCGCGGAGGACCACTGGAGGCGCCGCGCGGCCGCCGCTGTCCGCGCTGGAGACCACAGCACCGCACAGGCAGCGCCTGTCCTCCGCGCCTCCGGAGCCTCCTCCAGCCTGCGCGCCGGGCGGATCGCACGGGCCATCTCCCACGGCGACCTACGGCTCGCCCTGCAG
Seq A exon
GTTCTTACTGGGAAGCCAATAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAGCGGGGCTGACAGACTGCAGCAAAAGAACAGAGGCCAGGCCACTGAGAAGCAGTTGTAATGGTACAGCCAAGCTAGAAGACTCTGACACGAGGCAAAG
Seq C2 exon
GAAGTTTGGACACATCATCAGTGGCCAGAGCTTTCCGAGTCTCGTCCGATCCGAGGGAGATGGACTGAAGCCACAGACTGTCTGGTTCTTTGTCTGGGAGTTGGAAGGAGGATTGGGATGGTCTCACGTGCACATCCCTAGACTAATTGCAACCATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCACAGAAGTGCCTTGTCGTCAACATCTTCTCAGAGGGAAAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812_MULTIEX1-2/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCCCACGGCGACCTA
R:
GTGGGTCGGAGTGGATGTTTT
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]