HsaEX6016890 @ hg38
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178194649-178328378:+
Coord C1 exon
chr2:178194649-178194674
Coord A exon
chr2:178284927-178285121
Coord C2 exon
chr2:178328256-178328378
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGTAATCTCTCTTTTTCAGGTT
3' ss Score
11.95
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCGCGGCGCCACCGCTCGCCCTCCAG
Seq A exon
GTTCTGCCACTTGCTGGGAAAACAGCAACAGAAGGATATTAAGGAGCCACCCCTATAATTTACCCAGATAGCCCCAGCAAGGTCAAAGACATATCATGTCCCAAGGAGAAAAGCTGCAGGCATCTGAGGATAAATCACTGTGAAACAGCTTTGACCATAAAGCTGACTTGGAAGACTTTGACTCCAAGGTGCAAG
Seq C2 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAAACATGAGGGCTTTATGCTGAAGAAAAGAAAATGGCCTTTAAAAGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156_MULTIEX1-4/15=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.209
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains