HsaEX6016889 @ hg38
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178284927-178328378:+
Coord C1 exon
chr2:178284927-178285121
Coord A exon
chr2:178306030-178306286
Coord C2 exon
chr2:178328256-178328378
Length
257 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTTTTGCTTTTAGGTG
3' ss Score
10.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCTGCCACTTGCTGGGAAAACAGCAACAGAAGGATATTAAGGAGCCACCCCTATAATTTACCCAGATAGCCCCAGCAAGGTCAAAGACATATCATGTCCCAAGGAGAAAAGCTGCAGGCATCTGAGGATAAATCACTGTGAAACAGCTTTGACCATAAAGCTGACTTGGAAGACTTTGACTCCAAGGTGCAAG
Seq A exon
GTGGTTTGGACACCCTCAATATTGCCTGCTCTTTTCTAGTCAAACCTGATTCATGAAATGGAATGAAGCTGAAAAATCATCTACTTCTTTGTTTGTGGATTTGAGAGAAGATTGGGATGGTCTTAAGTGCATAAAACGAGACTCTAACTGCAGCGATGAGTTCAGATGAGAAGGGCATTTCCCCTGCTCATAAAACATCCACTCCAACCCATAGAAGTGCCTCCTCTTCAACATCCTCCCAAAGGGACAGTAGGCAG
Seq C2 exon
GAAGCTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAAACATGAGGGCTTTATGCTGAAGAAAAGAAAATGGCCTTTAAAAGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156_MULTIEX1-5/15=4-8
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.209
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF154091=PH_8=PU(16.7=36.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCACTTGCTGGGAAAA
R:
AGGCCATTTTCTTTTCTTCAGCA
Band lengths:
299-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains