MmuEX0033234 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76499257-76540196:+
Coord C1 exon
chr2:76499257-76499422
Coord A exon
chr2:76523889-76524144
Coord C2 exon
chr2:76540104-76540196
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTTCTGTTTTAAGGTG
3' ss Score
10.63
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTTCTTGCTGGGAAACCAACAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAACAGGGCTGGCAGACCGCAGAGGAGCAAGACGAGCTAAAGGCATCCAAAGCCAGTCCACTGAGAAGCAGTTGTAATGGTGCAGCCAAGCTAGAAGACTTTGACACAAGCCGAAG
Seq A exon
GTGGTTTGGACTCGTCAGCAGTGGCCTGAGTTTTCCTAGTCCAGTCTGATCCGAGGGAGATGGACTAAAGCCACAGATTGTCTGCTTCTCTGTCTGTGAATTGCAAGGAGGATTGGGATGGTCTTCCGTGCACATCCCTAGACTAATTGCAGCAATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCATAGAAGTGCCTCGTCTTCAACATCTTCTCAGAGGGAAAGCAGACAG
Seq C2 exon
AGCATCCACGTTTTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCTGTCAGTCGGCAGTTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359_MULTIEX1-5/23=3-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.799
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAAAGAAGACAGTTAAGGCA
R:
CTTGGAGAGGGGGATGGGC
Band lengths:
244-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types