DreEX0052785 @ danRer10
Exon Skipping
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1427889-1457697:-
Coord C1 exon
chr9:1457477-1457697
Coord A exon
chr9:1432050-1432302
Coord C2 exon
chr9:1427889-1428011
Length
253 bp
Sequences
Splice sites
3' ss Seq
CCATGTACTCTGTGTTTCAGGTG
3' ss Score
10.38
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
ATTCCAGCCACACACAGCACTTTCCCCTCACTTTCTGCACTTAATTCACCTCACCTCGACATCCTCCTCCAAAATAACCGACTGTCCGCGGGACTAAGCGCTGGGATAGCCGGATAAACAGCTTCCTCTTCGGCTACCGCTTCGCTAATTCACGGCAGCGTCGGCTTTCTGCGCCAAGAGATGATGATGATGATGGTAATGATGTGGACACCGAACCGCTG
Seq A exon
GTGAACTTGTGCAGTAGTTTGACTGGTCATGCTGTGCTTTGGAGGGACGAGAGACACTAAGTAAACAAGCGAGTGGAGAGAAAGAAGAAAAACCGCAGCCTCCATCATGTCCCGCCATCAGAGCCGAACCACCAGCCTGGAGGAGAAAGTGGCCACGCCCATCCACAGAAGCACCGCCCCCTTGCAGAAAAGCTCCACCCCCACGCACAAGAGCGCCTCCTCCTCCTCGTCCTCTCAGAGGGACAGTCGGCAG
Seq C2 exon
GAGCCGGACAGTTGGGAGATCATCGAGGGTCTGAGGATTGGACAGACTCATGTGCAGCGGCCCGAGAAGCACGAAGGCTTCATGCTGAAGAAGAGGAAGTGGCCTCTGAAGGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730-'1-1,'1-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.293
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGCACTTTCCCCTCAC
R:
ATGAAGCCTTCGTGCTTCTCG
Band lengths:
294-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]