RnoEX6017500 @ rn6
Exon Skipping
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63353178-63394534:+
Coord C1 exon
chr3:63353178-63353321
Coord A exon
chr3:63379037-63379292
Coord C2 exon
chr3:63394442-63394534
Length
256 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGCTTTGTTTATAGGAA
3' ss Score
9.47
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ACTGGGAAGCCAATAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAGCGGGGCTGACAGACTGCAGCAAAAGAACAGAGGCCAGGCCACTGAGAAGCAGTTGTAATGGTACAGCCAAGCTAGAAGACTCTGACACGAGGCAAAG
Seq A exon
GAAGTTTGGACACATCATCAGTGGCCAGAGCTTTCCGAGTCTCGTCCGATCCGAGGGAGATGGACTGAAGCCACAGACTGTCTGGTTCTTTGTCTGGGAGTTGGAAGGAGGATTGGGATGGTCTCACGTGCACATCCCTAGACTAATTGCAACCATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCACAGAAGTGCCTTGTCGTCAACATCTTCTCAGAGGGAAAGCAGACAG
Seq C2 exon
AGCATCCACGTTCTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCCATCAGTCGGCAGCTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-'4-8,'4-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGAAGCCAATAAAAGAAGACA
R:
CTTGGAGAGGGGGATGGGC
Band lengths:
237-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]