HsaEX6016889 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179149654-179188996:+
Coord C1 exon
chr2:179149654-179149848
Coord A exon
chr2:179170757-179171013
Coord C2 exon
chr2:179188904-179188996
Length
257 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTGTTTTGCTTTTAGGTG
3' ss Score
10.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTCTGCCACTTGCTGGGAAAACAGCAACAGAAGGATATTAAGGAGCCACCCCTATAATTTACCCAGATAGCCCCAGCAAGGTCAAAGACATATCATGTCCCAAGGAGAAAAGCTGCAGGCATCTGAGGATAAATCACTGTGAAACAGCTTTGACCATAAAGCTGACTTGGAAGACTTTGACTCCAAGGTGCAAG
Seq A exon
GTGGTTTGGACACCCTCAATATTGCCTGCTCTTTTCTAGTCAAACCTGATTCATGAAATGGAATGAAGCTGAAAAATCATCTACTTCTTTGTTTGTGGATTTGAGAGAAGATTGGGATGGTCTTAAGTGCATAAAACGAGACTCTAACTGCAGCGATGAGTTCAGATGAGAAGGGCATTTCCCCTGCTCATAAAACATCCACTCCAACCCATAGAAGTGCCTCCTCTTCAACATCCTCCCAAAGGGACAGTAGGCAG
Seq C2 exon
AGTATTCACATACTGGAGAGGACTGCTTCCTCTAGCACCGAGCCCTCTGTAAGTCGGCAATTGCTAGAACCGGAGCCAGTCCCCCTCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'4-6,'4-3,5-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.778
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGCCACTTGCTGGGAAAA
R:
CTTGGAGAGGGGGACTGGC
Band lengths:
287-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)