GgaEX0013479 @ galGal3
Exon Skipping
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16564709-16617124:-
Coord C1 exon
chr7:16616984-16617124
Coord A exon
chr7:16574862-16575097
Coord C2 exon
chr7:16564709-16564804
Length
236 bp
Sequences
Splice sites
3' ss Seq
CTTTCACGTTTTTCTTTAAGGTG
3' ss Score
10.5
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
NNNNNNNNNNACGTCCTTTTACATCCCCGCGCGGACCTGACCGNGGTTCCGTCAGGGTGCTCGCCGCCCGCNGCAGCCCCGCTTCGTGACCCTGAGATTCGCTCCACGCCGTCCCCTCCTGCCGGGCCCTTCGTCCCCGCG
Seq A exon
GTGAAGTTCAGCTGAGTTTGAAGTCTTTTGGAGGTCCGTAAACTGTGAAACAGAAGAATGCAGAAGAGTATCCCTTGCATTTTTGTACATGAGTGACAAGAGCACAAAATCGTTACTGCTAGTGTGCTGCGAAGATGAGTTCGGAGGAGAAGAGTATATCTCCTGCTCACAAAACTTCCACACCATCACATAGAAGTGCCTCCTCTTCATCATCATCTCAGAGGGATAGGAGGCAG
Seq C2 exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-'1-6,'1-2,9-6
Average complexity
C3
Mappability confidence:
94%=89=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.594
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTTTTACATCCCCGCG
R:
TGGACAGAGAGATAGGGTCTGC
Band lengths:
224-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]