MmuEX0033229 @ mm9
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76244565-76362201:+
Coord C1 exon
chr2:76244565-76244746
Coord A exon
chr2:76337314-76337479
Coord C2 exon
chr2:76361946-76362201
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTCCCTCTTTTCCAGGTT
3' ss Score
12.06
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAGGAGGGGCTGCGGCGCGGAGGACCACTGGAGGCGCCGCGCGGCCGCCGCTGTCCGCGCTGGAGACCACAGCTCGGCACAGGCGGCGCCCGTCCTCCGCGCCTCCGGAGCCTCCTCCAGCCTGCGCGCCGGGCAGATAGCACGGGCCATCTCCCACCGCGACCTACCGCTCGCCCTGCAG
Seq A exon
GTTCTTGCTGGGAAACCAACAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAACAGGGCTGGCAGACCGCAGAGGAGCAAGACGAGCTAAAGGCATCCAAAGCCAGTCCACTGAGAAGCAGTTGTAATGGTGCAGCCAAGCTAGAAGACTTTGACACAAGCCGAAG
Seq C2 exon
GTGGTTTGGACTCGTCAGCAGTGGCCTGAGTTTTCCTAGTCCAGTCTGATCCGAGGGAGATGGACTAAAGCCACAGATTGTCTGCTTCTCTGTCTGTGAATTGCAAGGAGGATTGGGATGGTCTTCCGTGCACATCCCTAGACTAATTGCAGCAATGAGTTCAGACGAGAAGGGCATATCCCCTGCTCATAAAACATCCACTCCGACCCATAGAAGTGCCTCGTCTTCAACATCTTCTCAGAGGGAAAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-'0-7,'0-4,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCCCACCGCGACCTA
R:
GAGGCACTTCTATGGGTCGGA
Band lengths:
256-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: