HsaEX6016890 @ hg19
Exon Skipping
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179059208-179171013:+
Coord C1 exon
chr2:179059208-179059401
Coord A exon
chr2:179149654-179149848
Coord C2 exon
chr2:179170757-179171013
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTGTAATCTCTCTTTTTCAGGTT
3' ss Score
11.95
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGGAGGCGCAGCACGGTCGCCGCCGCCGCTGTCGGTGCTGGAGATCGCGGCTCGGTGCAGGCGGCGCCCATGCCTCCTCTCCTCCACTAGCCCGCGCGCCAGTCCGCCTGCCGGGGCCGGCTCTCCGCCTCCTGCCTCCCGTCGCAGCCGCGCAGCCGCCGCAGAGTCCGCGGCGCCACCGCTCGCCCTCCAG
Seq A exon
GTTCTGCCACTTGCTGGGAAAACAGCAACAGAAGGATATTAAGGAGCCACCCCTATAATTTACCCAGATAGCCCCAGCAAGGTCAAAGACATATCATGTCCCAAGGAGAAAAGCTGCAGGCATCTGAGGATAAATCACTGTGAAACAGCTTTGACCATAAAGCTGACTTGGAAGACTTTGACTCCAAGGTGCAAG
Seq C2 exon
GTGGTTTGGACACCCTCAATATTGCCTGCTCTTTTCTAGTCAAACCTGATTCATGAAATGGAATGAAGCTGAAAAATCATCTACTTCTTTGTTTGTGGATTTGAGAGAAGATTGGGATGGTCTTAAGTGCATAAAACGAGACTCTAACTGCAGCGATGAGTTCAGATGAGAAGGGCATTTCCCCTGCTCATAAAACATCCACTCCAACCCATAGAAGTGCCTCCTCTTCAACATCCTCCCAAAGGGACAGTAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-'0-3,'0-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCTCCTCTCCTCCACTA
R:
TGCACTTAAGACCATCCCAATCT
Band lengths:
256-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)