MmuEX0033229 @ mm10
Exon Skipping
Gene
ENSMUSG00000042359 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:MGI Symbol;Acc:MGI:2139014]
Coordinates
chr2:76406508-76514156:+
Coord C1 exon
chr2:76406508-76406689
Coord A exon
chr2:76499257-76499422
Coord C2 exon
chr2:76513917-76514156
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTCCCTCTTTTCCAGGTT
3' ss Score
12.06
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGAGGAGGGGCTGCGGCGCGGAGGACCACTGGAGGCGCCGCGCGGCCGCCGCTGTCCGCGCTGGAGACCACAGCTCGGCACAGGCGGCGCCCGTCCTCCGCGCCTCCGGAGCCTCCTCCAGCCTGCGCGCCGGGCAGATAGCACGGGCCATCTCCCACCGCGACCTACCGCTCGCCCTGCAG
Seq A exon
GTTCTTGCTGGGAAACCAACAAAAGAAGACAGTTAAGGCACCAGCAGTGCCAACAGGGCTGGCAGACCGCAGAGGAGCAAGACGAGCTAAAGGCATCCAAAGCCAGTCCACTGAGAAGCAGTTGTAATGGTGCAGCCAAGCTAGAAGACTTTGACACAAGCCGAAG
Seq C2 exon
GCCTCCAGCAGAAGGTGTGGCCCAGATTAAAGGCGTGTACCACCACAGCTAGATTTGGAACTTGCCCTGTCCCAGGCTGGCCTTGGAATTCAGAGATCTGCTTGCCTCAGTCTCCTGCGATCTTGCCTGAACCTGAGCTTTTTATGGCCACAGTGCCTCAAGATCTCGATCAAAAGGACGTCCCTTGTCAAGATCCAGGTCAGACACCAGAGTCCTCCAGCCTCAAGATCTGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042359-'0-11,'0-7,12-11
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAGCACGGGCCATCTCC
R:
CCTGGATCTTGACAAGGGACG
Band lengths:
246-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types