RnoEX0062542 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84986384-84987903:+
Coord C1 exon
chr10:84986384-84986520
Coord A exon
chr10:84987149-84987262
Coord C2 exon
chr10:84987752-84987903
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACCTCTTCTCCCACCCACAGTGT
3' ss Score
11.2
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
CGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCAGCTCTGTGAAGAGGTAGCTGGTGACTCGGAGACTGTCTCAGAGGCACATCAGCATACGGACCAAGAAGCACTGACGTTCATGGAGCCTGGG
Seq A exon
TGTCTCAGCCGGCCAGTGTCCTGCTCCTTCTGAGTGGGAGGTGCTTCTCAGGAGCACAGAGGACTAACATGGTAGCAAGGGGCTGGTGAGGCTTTGCAGGGAAGAGAGTCCAAG
Seq C2 exon
GGTCCCCCCAGGACAAGGTGACATTCTCCCCATCCCACTCTGCTCTGCTGTCCTCACCAGGGAATAACTTCTTCCTCATGGACTTCCAGGAAAGAGACACTCCCTCCCTGGCTGAGAGTACTCAGTCTTCAAAGCCCAGCAGTACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCAGCTCTGTGAAGAGGT
R:
GGGTACTGCTGGGCTTTGAAG
Band lengths:
244-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]