RnoALTA0027697-4/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84986328-84987903:+
Coord C1 exon
chr10:84986328-84986520
Coord A exon
chr10:84987752-84987840
Coord C2 exon
chr10:84987841-84987903
Length
89 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGGGTCTCTCTTGCTTCAAGGGT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GGGGAGATCCGGCTGGAGGGGAGGCTCCAACGTCTCCTTCCTTCCTGGTTCTGCAGCGGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCAGCTCTGTGAAGAGGTAGCTGGTGACTCGGAGACTGTCTCAGAGGCACATCAGCATACGGACCAAGAAGCACTGACGTTCATGGAGCCTGGG
Seq A exon
GGTCCCCCCAGGACAAGGTGACATTCTCCCCATCCCACTCTGCTCTGCTGTCCTCACCAGGGAATAACTTCTTCCTCATGGACTTCCAG
Seq C2 exon
GAAAGAGACACTCCCTCCCTGGCTGAGAGTACTCAGTCTTCAAAGCCCAGCAGTACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-0-4,0-3,0-2,0-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCTTCCTGGTTCTGCA
R:
CCAGGGAGGGAGTGTCTCTTT
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]