MmuALTA1030140-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97050628-97052376:+
Coord C1 exon
chr11:97050628-97050953
Coord A exon
chr11:97052225-97052235
Coord C2 exon
chr11:97052236-97052376
Length
11 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GGTCTCTCTCTTGCTTCAAGGGT
3' ss Score
6.34
Exon sequences
Seq C1 exon
TCAGTCCTCTGAAGCATGTGGAACTATGCCCAGTGGGGATTGTGCCCCTCATTTCCAAGTCATTTGGTACCACTCCGTCCTTAGTCCTCCCGAGAGCAGGGGGGCAGAGCTGAGCGGCAGCCCGGAGCTTGGCGGGAGGAGGCAACGGAGGAGGGGCAGGTGGGGAGATCCGGCTGGAGGGGAGGCTCCGACGTCTCCTTCCTTCCTGGTTCCTGCAGTAGCTGCTGCAACTGCTCAGTTCTGTGAAGAGCTAGCCGGTGACTCGGAGACAGTCTCAGGCACAGCAGCGTACGGATCAAGAGGCTCTGGCGTCCATGGATCCTGGG
Seq A exon
GGTTCCCCCAG
Seq C2 exon
GACAAGGTGACATTCTCCCCAACCCACCCGGCCCTGCCGTCCTCATCGGGGAGCAACTTCTTCCTCATGGACTTCCAGGAAAGAGACACGCCCTCTTTGGCTGAGAGTACTCAGTCTTCAAAGCCCAGCAGTACCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.614 A=NA C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGATCAAGAGGCTCTGGC
R:
GGAAGAAGTTGCTCCCCGATG
Band lengths:
101-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types