HsaALTA1000519-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47820204-47821770:-
Coord C1 exon
chr17:47821666-47821770
Coord A exon
chr17:47820300-47820365
Coord C2 exon
chr17:47820204-47820299
Length
66 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
GGTCTTTCTCTTGCTTCAAGGAC
3' ss Score
6.94
Exon sequences
Seq C1 exon
TGCCACTGCTCAGCGCGGTGAGGAGGGAGCCGGTGACTCGGAGACGGTGACTCAGAGGCAGAGCGGCGCAAGGGCCAAGGAGTACTGGCGTCCATGGACCCTGGG
Seq A exon
GACCCCGTCAGGAGCAGGTGACATCCTTCCCCTTCCACCCTGCTCCCTGCTCTACATCCCCAGCAG
Seq C2 exon
GGAGTGGCCTCTCCCTTCTCCATGGACTTCCAAGAGAGGGACCCGCCCTTCCTGCCTGAGAGCGCTCAGTCCTCAAAGCCCAGCAGTGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-0-4,0-3,0-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGAGCCGGTGACTC
R:
CTGCTGGGCTTTGAGGACTG
Band lengths:
170-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains