RnoEX0062662 @ rn6
Exon Skipping
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102301168-102304380:+
Coord C1 exon
chr1:102301168-102301285
Coord A exon
chr1:102302185-102302264
Coord C2 exon
chr1:102302654-102304380
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTGCTCTGTCCTTAGGGT
3' ss Score
12.02
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
ATGCCAAGCCTTCGGGGGCTGCCTACCCCATCTGTGAGTGGCACTATGATGCCTGCGCTAGCCCCTGTTTCCAAACCTGCCGGGACCCGCAGGCAGCCAGCTGCCAGGATGTGCCCAG
Seq A exon
GGTAGAAGGCTGTGTCCCTGTGTGTCCCACTCCTAAGGTCCTGGATGAAGTCACACAGAGATGTGTCTACCTGGAAGACT
Seq C2 exon
GTGTGGAGCCAGCCCTGCGGGGTCCCAAGGAGACCCTTGGTAATGAGACTCTGGCACCTGGTCAAGTGCTTCCCACCACCAGTGACAAGCAGCAGCTTCCACAGGAGCCCCCTGGAGCCTCCACCCACATCCCTGTCCTTGATCCACTAGCCCCACTCACCTCAGCCCCAAATCCACCAATGGCTGCCACTGAGGGGCCAGTGGCATCTCCAGGATCCACCCAACCCACGCTGCAGACATCACTGGGGCTTACAACATCTAACCTTCCTGCTGGCCACACAGAGGCCACAGCCAGAGAGGAAGGGGCTGCCAGCCTCCTAGCTACTTCTCCTCCCCCAGGGTCCTCCTCATCCCTCCCCAGTTCTCTGCAGACACCAACATCTGGCATTTTATCAAGTACAACAGAGACAACCAAAGTGACCTTAACCTTTGCAGGGAGTCCCAACACCACCGTCACTTCCCGGTCACCCCCCGTACCTCGCTTCCCACTCATGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.955
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCACTATGATGCCTGC
R:
CTTGTCACTGGTGGTGGGAAG
Band lengths:
172-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]