MmuEX7003828 @ mm10
Exon Skipping
Gene
ENSMUSG00000009487 | Otog
Description
otogelin [Source:MGI Symbol;Acc:MGI:1202064]
Coordinates
chr7:46285746-46288985:+
Coord C1 exon
chr7:46285746-46285863
Coord A exon
chr7:46286747-46286826
Coord C2 exon
chr7:46287220-46288985
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTGCTCTGTCCTTAGGGT
3' ss Score
12.53
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
Exon sequences
Seq C1 exon
ATGCCAAGCCTTTGGGGGCTGCCTACCCCACCTGTGAGTGGCGCTACGATGCCTGTGCTAGCCCCTGTTTCCAAACCTGCCGGGACCCACGGGCAACCAGCTGCCAGGATGTGCCCAG
Seq A exon
GGTAGAAGGCTGTGTCCCTGTGTGTCCCACTCCTAAGGTCCTGGATGAAGTCACACAGAGATGTGTCTACCTGGAAGACT
Seq C2 exon
GTGTGGAGCCAGCCCCGCGGGGTCCCACGGAGACCCTTGGCAATGAGACTCTGGTACCTGGTCAAGTGCCACCCACCACCAGTGCCGAGCAGCAGCTTCCACAGGGGCTCCCTGGAGCCTCTGCCTACAGCCCCGCCCCTGTTCCAGTAGCCCCACCCACCTCAGCCCCAAACCCACCAATGGCTGCCACGGAGGGGCAAGCGCCATCTCCAGGATCCACCCAACCCACACTGCAGACACCCCTGGGCCTTACAACATCTAACTTTCCTGCTGGCCACACAGAGGCCACAGCCAGAGAGGAAGGGGCTGCCAGCCTTCTAACCACTTCTCATCCCCCAGGGTTCTCGTCCTCCCTCCCTAGTTCCCTGCAGATGCCCACATCTGGCATTGTATCAGGTGCAACAGAGACAACCAAAGTGACCATAACCTTTACAGGGAGTCCCAACACCACTGTCGCTTCCCGGTCACCCCCTATACCTCGCTTCCCACTCATGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009487-'27-43,'27-33,36-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.830
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCCCACCTGTGAGTGG
R:
GGCACTTGACCAGGTACCAGA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types