BtaEX6058909 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000987 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
Coordinates
chr15:35436136-35439160:-
Coord C1 exon
chr15:35439043-35439160
Coord A exon
chr15:35438406-35438485
Coord C2 exon
chr15:35436136-35437919
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCGCCCTGCTCTGTCCTCAGGGT
3' ss Score
10.8
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ATGCCAAGCCCTCAGGGGCTGCCTACCCCACTTGTGAGTGGCACTATGATGCCTGTGCCAGCCCCTGCTTCCAAACCTGCCGGGACCCATGGGCAGCCGGCTGCCGGGATGTGCCCAG
Seq A exon
GGTGGAGGGCTGTGTGCCCGCGTGTGCCACCCCCAAGGTCCTGGATGAAGTCACACAGAGATGCGTCCACTTGGAGGACT
Seq C2 exon
GTGTGGAGCCTGTGGATTTGGTTCCCAGGGAGGCCCTTGGCAACGAGACCCTGCCTCCCGGTCAAGCGCTGCCCACTGCCAGTGACAGGGAGCCGCAGTTTCCACAGGAAGCTCCCGGGGCCTCATCCCACAGGCCAGCGCTCACACCGACTGCCCCACTCACCACAGCCCTGAACCCGCCCACGGCAGCCACGGTGGGGCCAGCGCTGTCTCCAGGCCCCGCCCAGGCCACTCAGCAACAGCTCCTGGGAGTCACAGCCTCTAACCTCCCCGAGCACCCCACAGAGGCCCCGGCCAGCAAAGGAGTGACTGCTGGCCACCCTGCTAGCTCCGGGGCCCCAGAGCCCTCATCCCTCCCCGTTTCACAGCACGTGCCCACATCTGGCATGGGGTCAGGTGCCATGGAGACGACCAGGGTGACCGTGATCCTGGCTGAGAGCCCCAACATCACAGTCTCCTCTCTGTCACCCCCCGCTCCTCGCTTCCCCCTCATGACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000987-'38-38,'38-37,39-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.852
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(50.0=70.0)
A:
PF0182612=TIL=FE(48.2=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAACCTGCCGGGAC
R:
GGGAGCTTCCTGTGGAAACTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]