HsaEX6001074 @ hg19
Exon Skipping
Gene
ENSG00000188162 | OTOG
Description
otogelin [Source:HGNC Symbol;Acc:8516]
Coordinates
chr11:17629843-17632970:+
Coord C1 exon
chr11:17629843-17629960
Coord A exon
chr11:17630677-17630756
Coord C2 exon
chr11:17631202-17632970
Length
80 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTGCTCTGTCCTCAGGGT
3' ss Score
11.44
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGCCAAGCCCTCGGGGGCTGCCTACCCCATCTGCGAGTGGCGCTACGATGCCTGTGCCAGCCCCTGCTTCCAAACCTGCCGGGACCCACGGGCAGCCAGCTGCCGGGACGTACCCAG
Seq A exon
GGTAGAAGGCTGTGTCCCTGTGTGCCCCACCCCCCAGGTCCTGGATGAAGTCACACAGAGATGTGTCTACTTGGAGGACT
Seq C2 exon
GTGTGGAGCCAGCAGTTTGGGTTCCCACAGAGGCCCTTGGCAATGAGACCCTCCCTCCCAGTCAAGGGTTGCCCACTCCCAGTGATGAGGAGCCACAGCTGTCACAGGAAAGCCCCAGGACCCCCACCCACAGGCCAGCCCTCACCCCAGCTGCCCCACTCACCACAGCCCTGAACCCACCAGTGACAGCCACTGAGGAGCCAGTGGTGTCTCCAGGCCCCACCCAGACCACCCTGCAGCAGCCACTGGAGCTCACTGCATCTCAACTCCCCGCCGGCCCCACGGAGTCCCCAGCCAGCAAGGGAGTGACTGCCAGCCTCCTGGCCATCCCCCATACACCAGAGTCCTCATCCCTCCCTGTTGCACTGCAGACACCCACACCTGGCATGGTGTCAGGTGCCATGGAGACAACAAGGGTGACTGTGATCTTTGCAGGAAGCCCTAACATCACAGTCTCCTCCCGGTCGCCCCCTGCCCCTCGCTTCCCGCTCATGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188162-'36-41,'36-40,37-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.861
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(49.1=67.5)
A:
PF0182612=TIL=FE(49.1=100)
C2:
PF0182612=TIL=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTTCCAAACCTGCC
R:
CTTTCCTGTGACAGCTGTGGC
Band lengths:
168-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)