DreEX6006531 @ danRer10
Exon Skipping
Gene
ENSDARG00000068460 | BX842701.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1Q7R5]
Coordinates
chr7:39210466-39213408:-
Coord C1 exon
chr7:39213291-39213408
Coord A exon
chr7:39213114-39213193
Coord C2 exon
chr7:39210466-39212885
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTACAATTGTCTTCCTGTAGGAT
3' ss Score
10.57
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCCATACCACATTATCCAATGGGTCCTCGTTGTCAGTGGAGGTTTGAGTCATGTGTGAGACCATGCTTCAGGACCTGCAGTGACCCATCAGGTCTGAGCTGTACCAGCATTCTTAA
Seq A exon
GATTGAAGGATGTTTGCCTCAATGTCCAAGTCACATGGTTCTAGATGAGGTTACTCACAGATGTGTCTCTTTGGAGGACT
Seq C2 exon
GCATTAGGCCTCCTGTTGTTCCTCCATTCACACTACCCAGCACTACAATATCATCAACACCCTTCTCCGAAGATTACACCTCGAGCATTCCAGCGGTTTCTACAGCACTCATCTCTACAGCAGTGTCAGAATCTAGTGCCACCACAACACCTACAACACACATGCCAACCACTGAAAAACCTACAACTTCCCCTATCAGACCTGAGGTGGTGGAAGTTATCACCACATTAACAACATCCTCTTCCTCCTGGAGTCCTCTGGCTTCTACTGAGAGAACCACTAAAGCACCAAGCATCACATCTAGTCCCACTTCCTCCACTACATTGTACACTAGCCCTGTGTCTATCTCAGCACCTGTCTCAGTTACCTCTACAACAAGCAGCCCAACAGAGTCTTCAACACCGTTCACACGTACCACAACTATTCCCTCGCAACCTAGTTCTAGCCCTGTTCTACGATCTACCTCAAGTTCAGAGCAGACCAGAGTAAGCACTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068460-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.866
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACCATGCTTCAGGACCT
R:
GTGCTGTAGAAACCGCTGGAA
Band lengths:
169-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]