RnoEX0063587 @ rn6
Exon Skipping
Gene
ENSRNOG00000008020 | Pax4
Description
paired box 4 [Source:RGD Symbol;Acc:620433]
Coordinates
chr4:55737647-55739100:-
Coord C1 exon
chr4:55739025-55739100
Coord A exon
chr4:55738362-55738487
Coord C2 exon
chr4:55737647-55737716
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACATTGTCCTCCTTTGCAGCTG
3' ss Score
10.79
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTATCCTCTATCAATCGAGTCCTTCGGGCACTACAGGAAGACCAGAGGTTACACTGGACACAACTTAGATCTCCAG
Seq A exon
CTGTTTTGGCTCCAGCTCTTCCTAGTCCCCACAGTAACTGTGAGGCTCCCCGAGGTCCCCACCCGGGGACCAGCCACAGGAATCGGACTATCTTCTCCCCGGGCCAAGCTGAGGCACTGGAGAAAG
Seq C2 exon
GTCTGGTTTTCCAACAGAAGAGCCAAATGGCGCAGACAAGAGAAGTTGAAATGGGAAACACAGATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008020_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=30.8)
A:
PF0004624=Homeobox=PU(29.8=39.5)
C2:
PF0004624=Homeobox=PD(19.3=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCCTCTATCAATCGAGTCCTT
R:
CTGGCATCTGTGTTTCCCATT
Band lengths:
146-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]