MmuEX6003262 @ mm10
Exon Skipping
Gene
ENSMUSG00000029706 | Pax4
Description
paired box 4 [Source:MGI Symbol;Acc:MGI:97488]
Coordinates
chr6:28444804-28445860:-
Coord C1 exon
chr6:28445785-28445860
Coord A exon
chr6:28445113-28445238
Coord C2 exon
chr6:28444804-28444886
Length
126 bp
Sequences
Splice sites
3' ss Seq
GACATTGTCCTCCTTTGCAGCTG
3' ss Score
10.79
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTGTCCTCTATCAATCGAGTACTTCGGGCACTTCAGGAAGACCAGAGCTTGCACTGGACTCAACTCAGATCACCAG
Seq A exon
CTGTGTTGGCTCCAGTTCTTCCCAGTCCCCACAGTAACTGTGGGGCTCCCCGAGGTCCCCACCCAGGAACCAGCCACAGGAATCGGACTATCTTCTCCCCGGGACAAGCCGAGGCACTGGAGAAAG
Seq C2 exon
AGTTTCAGCGTGGGCAGTATCCAGATTCAGTGGCCCGTGGGAAGCTGGCTGCTGCCACCTCTCTGCCTGAAGACACGGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029706-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.548 A=1.000 C2=0.616
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=30.8),PF0004624=Homeobox=PU(11.1=19.2)
A:
PF0004624=Homeobox=PU(29.8=39.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCTATCAATCGAGTACTT
R:
ACCGTGTCTTCAGGCAGAGAG
Band lengths:
155-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types