BtaEX6028386 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000410 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:HGNC:8618]
Coordinates
chr4:92643395-92644460:-
Coord C1 exon
chr4:92644385-92644460
Coord A exon
chr4:92643693-92643818
Coord C2 exon
chr4:92643395-92643477
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTCCTGTCTCCCTTTGCAGCTG
3' ss Score
12.39
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
Exon sequences
Seq C1 exon
GTCTCCTCTATCAACCGCGTCCTGCGGGCATTGCAGGAGGACCAGAGACCGCCCTGGATACATCTCAGGTTGCCAG
Seq A exon
CTGGTCTGGGTCCAATTCCTCGAACTCCCCCCTGTGACTCTGAGGCTCCCCGGGGTCCCCACCCAGGAACTGGCCACCGGAATCGGACAATCTTTTCCCCAGGCCAAGCCGAGGCGCTGGAGAAAG
Seq C2 exon
AATTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGGAAACTGGCTGCAGCCACCTCTCTGCCCGAGGACACGGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000410-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.577 A=0.953 C2=0.071
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=30.8)
A:
PF0004624=Homeobox=PU(29.8=39.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCTCTATCAACCGCGTC
R:
CCGTGTCCTCGGGCAGAG
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]