HsaEX6010285 @ hg19
Exon Skipping
Gene
ENSG00000106331 | PAX4
Description
paired box 4 [Source:HGNC Symbol;Acc:8618]
Coordinates
chr7:127253504-127254611:-
Coord C1 exon
chr7:127254536-127254611
Coord A exon
chr7:127253810-127253935
Coord C2 exon
chr7:127253504-127253586
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTGTTATCTTCCTTTTCAGCTG
3' ss Score
11.47
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
Exon sequences
Seq C1 exon
GTCTCCTCCATCAACCGAGTCCTGCGGGCATTACAGGAGGACCAGGGACTACCGTGCACACGGCTCAGGTCACCAG
Seq A exon
CTGTTTTGGCTCCAGCTGTCCTCACTCCCCATAGTGGCTCTGAGACTCCCCGGGGTACCCACCCAGGGACCGGCCACCGGAATCGGACTATCTTCTCCCCAAGCCAAGCAGAGGCACTGGAGAAAG
Seq C2 exon
AGTTCCAGCGTGGGCAGTATCCTGATTCAGTGGCCCGTGGAAAGCTGGCTACTGCCACCTCTCTGCCTGAGGACACGGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106331-'3-7,'3-6,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.894 A=0.994 C2=0.750
Domain overlap (PFAM):
C1:
PF0029213=PAX=PD(6.4=30.8)
A:
PF0004624=Homeobox=PU(29.8=39.5)
C2:
PF0004624=Homeobox=FE(47.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCCATCAACCGAGTCC
R:
ACCGTGTCCTCAGGCAGAG
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)