RnoEX0064246 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166564814-166575129:+
Coord C1 exon
chr1:166564814-166564880
Coord A exon
chr1:166569293-166569406
Coord C2 exon
chr1:166575068-166575129
Length
114 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTGTATATTGCCCAGCCT
3' ss Score
3.5
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAACCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
CCTTCCTAGGTGGCTGCTATGTCAATAGGAAGATGAGTGAGATGAGTGTCCCCAAGTCTGCACAATACTATATCATCAAGCCTGTCGCAGGTAGCTCAGACACAGATGCCACAG
Seq C2 exon
CCAGCCAGGACCCCCTTGCACAGAAGCCAGAGCCCCCAGGGAGTAGAGACGACCGACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560-'11-5,'11-4,12-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=1.000 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000026586fB10432
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCAGGTCTTCCTCAAG
R:
CCAGTCGGTCGTCTCTACTCC
Band lengths:
122-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]