RnoEX0064265 @ rn6
Exon Skipping
Gene
ENSRNOG00000019560 | Pde2a
Description
phosphodiesterase 2A [Source:RGD Symbol;Acc:620965]
Coordinates
chr1:166564814-166595531:+
Coord C1 exon
chr1:166564814-166564880
Coord A exon
chr1:166575068-166575129
Coord C2 exon
chr1:166595442-166595531
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGGCCTTCTTGTCTCTGCAGCCA
3' ss Score
10.14
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAACCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
CCAGCCAGGACCCCCTTGCACAGAAGCCAGAGCCCCCAGGGAGTAGAGACGACCGACTGGAG
Seq C2 exon
GATGCTTTGCTGAGCCTGGGCGCCGTTATCGACATCGCGGGCCTTCGACAGGCTGCCAAGGATGCCCTCTCGGCCGTGCTCCCCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019560_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.916 A=0.952 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCAAGCCGGACGAAC
R:
CACTTTGGGGAGCACGGC
Band lengths:
142-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]