BtaEX0026332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008419 | PDE2A
Description
Bos taurus phosphodiesterase 2A, cGMP-stimulated (PDE2A), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001256273]
Coordinates
chr15:52948904-52984107:-
Coord C1 exon
chr15:52983940-52984107
Coord A exon
chr15:52972995-52973056
Coord C2 exon
chr15:52948904-52948993
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGGCTTTCTTGTCTCTGCAGCCA
3' ss Score
9.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CGAGGCGCAGCGGCCGGGCCGGCGGGCGGGCGGGCGGCTGCGAGCATGGTCCTGGTGCTGCACCACATCCTCATCGCTGTTGTCCAATTCTTCAGGCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
CCAGCCGGGACCTCTTTGCACAGGAGCCAGTGCCCCCAGGGAGTGGAGACGGCGCATTGCAG
Seq C2 exon
GATGCTTTGCTGAGCCTGGGCTCCGTCATCGACGTTGCAGGCTTGCAACAGGCTGTCAAGGAGGCCCTGTCGGCTGTGCTTCCCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008419-'1-4,'1-1,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.857 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCCAATTCTTCAGGCGGG
R:
CAAGCCTGCAACGTCGATGA
Band lengths:
134-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development