HsaEX0046193 @ hg38
Exon Skipping
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72608662-72642326:-
Coord C1 exon
chr11:72642254-72642326
Coord A exon
chr11:72631078-72631139
Coord C2 exon
chr11:72608662-72608751
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGACCTTCTTGTCTCTGCAGCCA
3' ss Score
10.88
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq A exon
CCAGCCTGGACCCCCTTGCAAAGGAGCCAGGACCCCCAGGGAGTAGAGACGACCGACTGGAG
Seq C2 exon
GACGCCTTGCTGAGTCTGGGCTCTGTCATCGACATTTCAGGCCTGCAACGTGCTGTCAAGGAGGCCCTGTCAGCTGTGCTCCCCCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642_MULTIEX2-1/13=C1-2
Average complexity
S*
Mappability confidence:
93%=100=93%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=0.957 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGGTCTTCCTCAAGCC
R:
CTGACAGGGCCTCCTTGACAG
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development