HsaEX0046188 @ hg38
Exon Skipping
Gene
ENSG00000186642 | PDE2A
Description
phosphodiesterase 2A [Source:HGNC Symbol;Acc:HGNC:8777]
Coordinates
chr11:72608662-72674453:-
Coord C1 exon
chr11:72674137-72674453
Coord A exon
chr11:72642254-72642326
Coord C2 exon
chr11:72608662-72608751
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTCCAATTCCTCAGGCG
3' ss Score
6.2
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGCATTATCAGACCTGCTCCAACCTCCTCCCAGAGCCAGCCGAGCAGCAGAGGCAGTGGCAGCGGGAGAGGCGGGAGCAGCGGGGCAGCAGAGCTGGATTGGGGTGTTGAGTCCAGGCTGAGTAGGGGGCAGCCCACTGCTCTTGGTCCCTGTGCCTGCTGGGGGTGCCCTGCCCTGAACTCCAGGCAGCGGGGACAGGGCGAGGTGCCACCTTAGTCTGGCTGGGGAGGCGGACGATGAGGAGTGATGGGGCAGGCATGCGGCCACTCCATCCTCTGCAGGAGCCAGCAGTACCCGGCAGCGCGACCGGCTGAGCC
Seq A exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq C2 exon
GACGCCTTGCTGAGTCTGGGCTCTGTCATCGACATTTCAGGCCTGCAACGTGCTGTCAAGGAGGCCCTGTCAGCTGTGCTCCCCCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186642-'0-19,'0-13,7-19
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.757 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTAGTCTGGCTGGGGAG
R:
CTGACAGGGCCTCCTTGACAG
Band lengths:
182-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development