MmuEX0034147 @ mm9
Exon Skipping
Gene
ENSMUSG00000030653 | Pde2a
Description
phosphodiesterase 2A, cGMP-stimulated [Source:MGI Symbol;Acc:MGI:2446107]
Coordinates
chr7:108570212-108629974:+
Coord C1 exon
chr7:108570212-108570509
Coord A exon
chr7:108599916-108599982
Coord C2 exon
chr7:108629885-108629974
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGTCCAATTCCTCAGGCG
3' ss Score
6.2
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGAGCCAGCCTAGCAGCAGAGGCAGTAGCAGCCGGAGAGGCAGGCGGAGCAGCCCAGGCAGCAGAGCTGGATCGTGTGTTGAGTACAGGCAGAGTCAAGAACCAGCCATTGCTCTTGGTTCCTATGCCTGCTGGGAGTGCCCCAGTCAGAACTCTGGGCAGTGGGGACAGGGGGGACGGGGCGAGGTGCCACCTTAGTCTGGCTGGGGAGGCAGATGATGAGGAGTGATGGGGCAGGCATGCGGCCACTCCATCCTCTGCAGGAGCCAGCAGTACCCGGCAGCGCGACCGGCTGAGCC
Seq A exon
GCGGGGCCAGCAGGTCTTCCTCAAGCCGGACGAGCCGCCGCCGCAGCCATGCGCCGACAGCCTGCAG
Seq C2 exon
GATGCTTTGCTGAGCCTAGGCGCCGTTATCGACATTGCTGGCCTGCGACAGGCTGCCAGGGATGCCCTCTCAGCCGTGCTCCCCAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030653-'0-6,'0-1,3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=0.861 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCAGAACTCTGGGCAGTG
R:
GCCTAGGCTCAGCAAAGCATC
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: